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A single bio-energetics growth and reproduction model for the oyster Crassostrea gigas in six Atlantic ecosystems ArchiMer
Alunno-bruscia, Marianne; Bourles, Yves; Maurer, Daniele; Robert, Stephane; Mazurie, Joseph; Gangnery, Aline; Goulletquer, Philippe; Pouvreau, Stephane.
Many studies based on bioenergetics growth models have investigated the effects of environmental factors on oyster (Crassostrea gigas) growth and physiology. However, most of these models are site-specific and cannot be applied to other culture sites without the re-estimation of parameters or re-formulation of some processes. We aimed to develop a generic growth model suitable for application in contrasting environments, with a constant set of parameters. We tested the oyster-DEB model (Bourlès et al. 2009) for the stimulation of C. gigas growth in different cohorts (spats and adults) at major shellfish culture sites in France, in several years: Arcachon (1993–1994); Marennes-Oléron (2007); Quiberon (1999, 2000, 2001); Rade de Brest (2008); Baie du...
Tipo: Text Palavras-chave: DEB theory; Modelling; Bivalves; Crassostrea gigas; Phytoplankton; Temperature effect; Coastal environment..
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00043/15403/12762.pdf
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Les mollusques invasifs des bassins conchylicoles du littoral Manche-Atlantique : diversité et structure génétiques des populations invasives, compétition avec les taxons indigènes, gestion du risque pour les écosystèmes et la conchyliculture ArchiMer
Bachelet, Pierrre; De Montaudouin, Xavier; Desclaux, C.; Mairesse, G.; Raigne, H.; Randriambao, K.; Garcia Meunier, Pascale; Martel, C.; Pascal, P. Y.; Sauriau, Pierre-guy; Simon-bouhet, Benoît; Robert, Stephane; Geairon, Philippe; Goulletquer, Philippe; Grangere, Karine; Guilpain, Patrice; Le Moine, Olivier; Rossi, Nadege; Seugnet, Jean-luc; Soletchnik, Patrick.
Shellfish areas usually receive a large number of introduced species. During the present project, we specially focused on 4 marine benthic molluscs introduced in shellfish areas along the Channel and Atlantic coasts of France: the gastropods Crepidula fornicata, Ocinebrellus inornatus and Cyclope neritea, and the bivalve Ruditapes philippinarum. Our study was conducted according to three main axes: (i) the characterization of introduction and expansion patterns of species within their newly colonized area. In the three invasive gastropods C. fornnicata, C. neritea and 0. inornatus, a high level of genetic diversity was detected in the French populations which indicated a complex process of introduction (with multiple population sources or secondary...
Tipo: Text Palavras-chave: Recommandations; Transfert; Ecosystèmes marins; Insularité; Expansion; Introduction espèces; Invasions biologiques; Mollusques.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/acte-3305.pdf
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Use of the kriging method for the stock assessment of oysters in the Chesapeake Bay ArchiMer
Bacher, Cedric; Chai, Ai-ling; Goulletquer, Philippe.
The krlging technique Is now employed ln more and more fields: mlnlng (Journel. 1977), hydrology (Delhomme, 197B; Shamsi et al" 1988; Dingman et al" 1988), fishery (Conan, 1989) and ecology (Robertson, 1987; Schotzko and O'Keeffe, 1989, 1990). Recent developments of the mathematlcal theory tend to extend the number of applications where Il may be used. Baslcally defined for the case of a statlonary spatial process, It now encompasses more general processes assuming less and less strong hypotheses (Intrinsic hypothesls, Intrlnsic generalised hypothesis, disjunctive krlglng). In its most general formulation, it allows to study the spatial structure of a process including large scale or local trends. The basic idea remains to take Into account the spatial...
Tipo: Text Palavras-chave: Kringing technique; Stock assessment; Oysters; Crassostrea virginica; Chesapeake Bay.
Ano: 1991 URL: http://archimer.ifremer.fr/doc/00200/31110/29518.pdf
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Comparaison des relations trophiques de Ruditapes philippinarum en milieux estuarien et océanique à partir d'un modèle de croissance ArchiMer
Bacher, Cedric; Goulletquer, Philippe.
A comparison of trophic relationships for Ruditapes philippinarum in estuarine and oceanic areas: the use of a growth mode!. Trophic relationships in Ruditapes philippinarum were studied in estuarine and oceanic areas of Marennes-Oleron during 1985 and 1986. Principal components analysis (P.C.A.) was used to reveal the fluctuations of the descriptors from the principal axes. Changes in dry weight were predicted in each area through an allometric growth model and were related to the principal axes derived from the P.C.A. The results of the model were used to compare the growth in each area and to point out the descriptors responsible for the discrepancies, such as autumnal blooms or silt resuspension. Attention was paid to the sampling strategy related to...
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Ano: 1989 URL: http://archimer.ifremer.fr/doc/1989/publication-2884.pdf
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Biological, socio-economic, and administrative opportunities and challenges to moving aquaculture offshore for small French oyster-farming companies ArchiMer
Barillé, Laurent; Bris, Anthony Le; Goulletquer, Philippe; Thomas, Yoann; Glize, Philippe; Kane, Frank; Falconer, Lynne; Guillotreau, Patrice; Trouillet, Brice; Palmer, Stéphanie; Gernez, Pierre.
Oyster production has historically taken place in intertidal zones, and shellfish farms already occupy large extents of the French intertidal space. The expansion of French shellfish aquaculture within intertidal areas is therefore spatially limited, and moving production to the subtidal offshore environment is considered to be a possible solution to this problem. Finding new sites along the French Atlantic coast was studied here from the perspective of small oyster companies run by young farmers, who are interested in offshore bivalve aquaculture expansion compatible with their investment capacity. In assessing the feasibility of such offshore production, we considered three main issues: (1) bivalve growth potential and (2) technical feasibility and...
Tipo: Text Palavras-chave: Pacific oyster; Site selection; Off-shore aquaculture; Remote sensing; Dynamic energy budget (DEB) model.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00606/71819/70593.pdf
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Réseau de veille zoosanitaire des mollusques REPAMO - Rapport d'activité pour l'année 1997 ArchiMer
Berthe, Franck; Pichot, Yves; Chollet, Bruno; Thebault, Anne; Kuntz, Gregoire; Tige, Gilbert; Thebault, Anne; Fleury, Pierre-gildas; Hirata, Toshio; Le Coguic, Yvette; Renault, Tristan; Lipart, Cecile; Grizel, Henri; Joly, Jean-pierre; Mazurie, Joseph; Baud, Jean-pierre; Goulletquer, Philippe; Dreno, Jean-paul; Buestel, Dominique.
Le réseau de veille zoosanitaire des mollusques, REPAMO, a été créé en 1992 afin de protéger les espèces d'intérêt économique des maladies susceptibles de les affecter. En effet, de même que les autres productions animales, la conchyliculture est frappée par diverses maladies dont certaines se comportent comme des facteurs limitants de la qualité ou de la quantité des productions. L' histoire de l'ostréiculture française a connu de tristes expériences en la matière, notamment dans les années 70 pour l' huître creuse portugaise, Crassostrea angulata ou encore pour l'huître plate, Ostrea edulis. En fait, nous ne disposons que de très peu de possibilités de protéger les mollusques bivalves vis à vis des maladies infectieuses. D' une part, les traitements,...
Tipo: Text Palavras-chave: Réseau surveillance; Pathologie; Mollusques bivalves; Mortalité.
Ano: 1998 URL: http://archimer.ifremer.fr/doc/00098/20901/18521.pdf
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Shelled Molluscs ArchiMer
Berthou, Patrick; Poutiers, Jean-maurice; Goulletquer, Philippe; Dao, Jean-claude.
Shelled molluscs are comprised of bivalves and gastropods. They are settled mainly on the continental shelf as benthic and sedentary animals due to their heavy protective shell. They can stand a wide range of environmental conditions. They are found in the whole trophic chain and are particle feeders, herbivorous, carnivorous, and predators. Exploited mollusc species are numerous. The main groups of gastropods are the whelks, conchs, abalones, tops, and turbans; and those of bivalve species are oysters, mussels, scallops, and clams. They are mainly used for food, but also for ornamental purposes, in shellcraft industries and jewelery. Consumed species are produced by fisheries and aquaculture, the latter representing 75% of the total 11.4 millions metric...
Tipo: Text Palavras-chave: Management; Fishing gears; Biology; Aquaculture; Fisheries; Gastropods; Bivalves.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2001/publication-529.pdf
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Liste des espèces marines introduites dans les eaux bretonnes et des espèces introduites envahissantes des eaux périphériques ArchiMer
Blanchard, Michel; Goulletquer, Philippe; Hamon, Dominique; Le Mao, Patrick; Nezan, Elizabeth; Gentil, Franck; Simon, Nathalie; Viard, Frédérique; Ar Gall, Erwan; Grall, Jacques; Hily, Christian; Le Duff, Michel; Stiger-pouvreau, Valérie; Acou, Anthony; Derrien-courtel, Sandrine; Feunteun, Eric; D'Hondt, Jean-loup; Canard, Alain; Ysnel, Frédéric; Perrin, Bertrand.
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Ano: 2010 URL: http://archimer.ifremer.fr/doc/00026/13737/10865.pdf
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Modelling growth and reproduction of the Pacific oyster Crassostrea gigas: Advances in the oyster-DEB model through application to a coastal pond ArchiMer
Bourles, Yves; Alunno-bruscia, Marianne; Pouvreau, Stephane; Tollu, Guillaume; Leguay, Didier; Arnaud, Christophe; Goulletquer, Philippe; Kooijman, S.
A bio-energetic model, based on the DEB theory exists for the Pacific oyster Crassostrea gigas. Pouvreau et al. [Pouvreau, S., Bourles, Y., Lefebvre, S., Gangnery, A., Alunno-Bruscia, M., 2006. Application of a dynamic energy budget model to the Pacific oyster, C. gigas, reared under various environmental conditions. J. Sea Res. 56, 156–167.] successfully applied this model to oysters reared in three environments with no tide and low turbidity, using chlorophyll a concentration as food quantifier. However, the robustness of the oyster-DEB model needs to be validated in varying environments where different food quantifiers reflect the food available for oysters, as is the case in estuaries and most coastal ecosystems. We therefore tested the oyster-DEB...
Tipo: Text Palavras-chave: Coastal Environment; Temperature effect; Food Quantifiers; Crassostrea gigas; Bivalves; Modelling; DEB theory.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6436.pdf
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Modelling Crassostrea gigas growth and reproduction in different contrasted ecosystems by using dynamic energy budgets : generic validation of the oyster-DEB model ArchiMer
Bourles, Yves; Maurer, Daniele; Le Moine, Olivier; Geairon, Philippe; Mazurie, Joseph; Gangnery, Aline; Alunno-bruscia, Marianne; Pouvreau, Stephane; Goulletquer, Philippe.
Oyster farming is the main aquaculture activity in France, where Pacific oyster (Crassostrea gigas) is spatially cultured from the English Channel to the Mediterranean coasts. Oyster growth performance monitored along French coasts are widely heterogeneous among culture sites and over years. Many studies have been carried out to understand the effects of environmental factors on oyster growth and physiology, by using bioenergetics growth models. However, most of these studies were site-specific. As an example, the model developed by Barillé et al. (1997), which was extensively specified with more than 50 parameters, was validated in the Marennes-Oléron Bay, but cannot be successfully applied to other culture sites without re-estimating parameters or...
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Ano: 2009 URL: http://archimer.ifremer.fr/doc/00032/14367/11657.pdf
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Modelling growth and reproduction in the Pacific oyster Crassostrea gigas : 1. What's new with the oyster-DEB model? ArchiMer
Bourles, Yves; Pouvreau, Stephane; Alunno-bruscia, Marianne; Leguay, Didier; Arnaud, Christophe; Goulletquer, Philippe; Kooijman, S. A. L. M..
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Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/acte-3330.pdf
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History, Status, and Future of Oyster Culture in France ArchiMer
Buestel, Dominique; Ropert, Michel; Prou, Jean; Goulletquer, Philippe.
The history of French oyster culture consists of a succession of developmental phases using different species, followed by collapses caused by diseases. The indigenous species Ostrea edulis was replaced first with Crassostrea angulata, then C. gigas. France is now the top producer and consumer of oysters in Europe, producing around 120,000 t of the cupped oyster C. gigas annually, and an additional 1500 t of the flat oyster O. edulis. Cupped oysters are produced all along the French coast from natural and hatchery spat. Various structures are used to collect spat from the wild. After a growing-on period, oysters are Cultivated by three main methods: (1) on-bottom culture in the intertidal zone or in deep water, (2) off-bottom culture in plastic mesh bags...
Tipo: Text Palavras-chave: Cupped oyster; Flat oyster; Ostrea edulis; Crassostrea gigas; French production; Aquaculture.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-7396.pdf
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Evaluation of oyster sampling efficiency of patent tongs and an oyster dredge ArchiMer
Chai, Ai-ling; Homer, Mark; Tsai, Chu-fa; Goulletquer, Philippe.
Sampling efficiency of two oyster fishing gears, patent tongs and an oyster dredge, were compared in reference to diver-harvested quadrats in Chesapeake Bay, which supports important harvests of eastern oyster Crassosrrea virginica. Mean densities of spat (0$35 mm), small oysters (>35 mm to 75 mm), marketable oysters (>75 mm), and all oysters (three size-groups combined) estimated from patent tong samples were not significantly different from those derived from diver-harvested quadrat samples. In contrast, the densities estimated from dredge samples were low, only 2-32% of the diver estimates. Accordingly, patent tongs are recommended as the sampling gear for estimating eastern oyster stock abundance in the Maryland portion of Chesapeake Bay.
Tipo: Text Palavras-chave: Chesapeke Bay; Sampling efficiencies; Crassostrea virgnica; Oysters.
Ano: 1992 URL: http://archimer.ifremer.fr/doc/1992/publication-3065.pdf
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A preliminary evaluation of the European Non-native Species in Aquaculture Risk Assessment Scheme applied to species listed on Annex IV of the EU Alien Species Regulation ArchiMer
Copp, G. H.; Godard, M. J.; Russell, I. C.; Peeler, E. J.; Gherardi, F.; Tricarico, E.; Miossec, Laurence; Goulletquer, Philippe; Almeida, D.; Britton, J. R.; Vilizzi, L.; Mumford, J.; Williams, C.; Reading, A.; Rees, E. M. A.; Merino-aguirre, R..
Developed for carrying out risk assessments under the European Commission (EC) Council Regulation No 708/2007 concerning the use of alien and locally absent species in aquaculture (ASR), the European Non-native Species in Aquaculture Risk Assessment Scheme (ENSARS) is briefly summarised, and the ‘Organism’ module is applied to the 24 species listed in ASR's Annex IV. Four other ENSARS modules (Infectious Agent, Facility, Pathway, and Socio-economic) were used to assess two case study species (European catfish Silurus glanis L. and red swamp crayfish Procambarus clarkii Girard). No Annex IV species was categorised as low risk, 10 as moderately low risk, 12 as medium risk, two as moderately high risk and none as high risk. The results are discussed and...
Tipo: Text Palavras-chave: Aquaculture; Biological invasions; Decision support; ENSARS; EU legislation; Risk analysis.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00189/30032/29433.pdf
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Development of a generic decision-support tool for identifying potentially invasive aquatic taxa: AS-ISK ArchiMer
Copp, Gordon H.; Vilizzi, Lorenzo; Tidbury, Hannah; Stebbing, Paul D.; Trakan, Ali Serham; Miossec, Laurence; Goulletquer, Philippe.
Electronic decision-support tools are now an essential component of government strate gies to battle non-native species, with taxon-specific, paper-based risk analysis schemes often being replaced by taxon-generic tools. This study reports on the development of a decision-support tool for aquatic species, the Aquatic Species Invasiveness Screening Kit (AS-ISK), which replaces five taxon-specific toolkits for amphibians, freshwater and marine fish and invertebrates (FISK, MFISK, FI-ISK, MI-ISK, Amph-ISK). Adapted from Pheloung et al.’s. Weed Risk Assessment (WRA), the “-ISK” toolkits were also “self-automated workbooks” in Excel® VisualBasic® architecture of the ’WRA. In creating AS-ISK, we incorporated the conceptual approach (questions and guidance) of...
Tipo: Text Palavras-chave: Risk analusis; Marine; Brackish; FISK; Ruditapes philippinarum.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00357/46770/46638.pdf
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Niveau de ploïdie des huîtres des bassins de captage de Marennes-Oléron et Arcachon ArchiMer
Cornette, Florence; Grouhel, Stephanie; Sharbel, Tim; Boudry, Pierre; Goulletquer, Philippe; Lapegue, Sylvie.
La mise en place du réseau « biovigilance » résulte des recommandations formulées dans le cadre de l’expertise indépendante demandée par le Comité Scientifique du Ministère de l’Agriculture et de la Pêche concernant « l’effet d’un flux éventuel d’huîtres tétraploïdes dans les zones conchylicoles ». Il avait été alors préconisé de réaliser « une biovigilance légère, avec mesure régulière du taux d’huîtres tétraploïdes dans les bassins conchylicoles ». Le sous-projet « Réseau biovigilance » s’inscrit dans le projet Ifremer « Typologie et surveillance des systèmes de productions aquacoles » du programme de recherches «Durabilité des systèmes de production » du thème « Surveillance et optimisation des productions aquacoles ». Ce réseau a pour objectif d’être...
Tipo: Text Palavras-chave: Reproduction; Captage; Arcachon; Marennes Oléron; Génétique; Crassostrea gigas; Ploïdie; Huîtres.
Ano: 2004 URL: http://archimer.ifremer.fr/doc/00043/15445/12815.pdf
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Effets de la turbidité sur les palourdes adultes Ruditapes philippinarum (Adams & Reeve) : croissance, mortalité, effort de reproduction, composition biochimique ArchiMer
Daou, Rafik; Goulletquer, Philippe.
Following observations on disparity in the growth of the Manila clam bred in the field, laboratory experiments were conducted to test the turbidity. This factor influenced the growth and mortality of Manila clam. The reproductive effort, growth and mortality of two populations were followed, one being cultivated in water with high levels on silt. A biochemical survey permitted the response to the effect of mineral particles to be estimated
Tipo: Text Palavras-chave: Mortality; Reproductive effort; Biochemical changes; Ruditapes philippinarum; Turbidity; Mortalité; Effort de reproduction; Composition biochimique; Ruditapes philippinarum; Turbidité.
Ano: 1988 URL: http://archimer.ifremer.fr/doc/1988/publication-2876.pdf
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Asari clam (Ruditapes philippinarum) in France: history of an exotic species 1972 – 2015 ArchiMer
De Montaudouin, Xavier; Arzul, Isabelle; Caill-milly, Nathalie; Khayati, Alice; Labrousse, Jean-michel; Lafitte, Céline; Paillard, Christine; Soudant, Philippe; Goulletquer, Philippe.
In 1972, France underwent an oyster (Crassostrea angulata) crisis and urgently needed to diversify its aquaculture. Thus, Asari clam (Ruditapes philippinarum) was introduced at that time for aquaculture purpose, concomitantly with the introduction of Pacific oyster (Crassostrea gigas). All Asari clam adults and spat originated from the same area (Puget Sound, WA, USA). After a promising start and the implementation of a national Research & Development program, Asari clam culture rapidly faced a series of concomitant handicaps: firstly, in spite the fact that cultural practices were optimized and locking points addressed, leasing ground availability was limited during the 1980s’ due to certain reluctance from oyster farmers to share their leases and/or...
Tipo: Text Palavras-chave: Ruditapes philippinarum; France; Aquaculture; Professional fishing; Diseases; Environmental stressors.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00366/47767/47817.pdf
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Emergence of biodiversity research and main progress from Ifremer ArchiMer
Desbruyeres, Daniel; Goulletquer, Philippe.
Research needs and interests on biodiversity have drastically increased since the Rio Conference (1992). The main conclusions from the Millennium Ecosystem Assessment (MEA, 2001) carried out by the UN and the demonstration of the critical role of biodiversity in maintaining ecosystems services have strengthened research interests on biodiversity. Moreover, the systemic approach generalization, complex system modeling, confluence of thematic prompting new scientific concepts, and multi-scalar – multifunctional approach have induced significant changes to the scientific context. A review of major advances on biodiversity monitoring and research resulting from Ifremer programs will be presented considering deep sea as well as coastal ecosystems and associated...
Tipo: Text Palavras-chave: Modelisation; Operational monitoring; Benthic habitat mapping; Ecosystem; Research; Marine biodiversity; Modélisation; Surveillance opérationnelle; Cartographie; Ecosystèmes; Recherche; Biodiversité marine.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/acte-6829.pdf
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Evolution saisonnière de la filtration de bivalves intertidaux dans des conditions naturelles ArchiMer
Deslous-paoli, Jean-marc; Heral, Maurice; Goulletquer, Philippe; Boromthanarat, Wilaiwan; Razet, Daniel; Garnier, Jacqueline; Prou, Jean; Barille, Laurent.
The study of cultivated ecosystems, once the trophic capacity ha! been determined and the molluscan stocks estimated, requires a knowledge of the evolution of the seasonal consumption of food by molluscs in natural conditions. For Crassostrea gigas, Mytilus edulis, Cerastoderma edule, Ruditapes philippinarum, the amount and quality of food have no effect on the filtration rate, except for the high load of mineraI seston. First an increase of the filtration rate was shown for Mytilus edulis and Cerastoderma edule at the end of winter and beginning of spring. Moreover Crassostrea gigas and Ruditapes philippinarum have shown no increase or only a small summer one. This evolution did not seem to be linked with the environmental conditions (temperature,...
Tipo: Text Palavras-chave: Natural food; Bivalves; Filtration rates; Nourritures naturelles; Bivalves; Taux de filtration.
Ano: 1987 URL: http://archimer.ifremer.fr/doc/1987/publication-3304.pdf
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